Uses an object of class slmfit
from the slmfit()
function to predict the response on the unsampled sites.
The column of the data set that has the response should have numeric values for the observed response
on the sampled sites and `NA` for any site that was not sampled.
Note that there is no newdata
argument to
predict.slmfit()
: any point in space for which a prediction
is needed should be included in the original data set in slmfit()
with the response variable as NA
.
# S3 method for slmfit
predict(object, wtscol = NULL, conf_level = 0.9, ...)
is an object generated from slmfit()
is the name of the column that contains the weights for prediction. The default setting predicts the population total
is the confidence level for a prediction interval, 0.90 by default
further arguments passed to or from other methods.
a list with
the estimated population total
the estimated prediction variance
a data frame containing
x-coordinates
y-coordinates
density predictions
count predictions
site-by-site density prediction variances
site-by-site count prediction variances
indicator variable for whether or not the each site was sampled
estimated mean for each site
area of each site
vector with estimated covariance parameters
the formula used to fit the model in slmfit()
the confidence level
the confidence interval bounds
data(exampledataset) ## load a toy data set
slmobj <- slmfit(formula = counts ~ pred1 + pred2, data = exampledataset,
xcoordcol = 'xcoords', ycoordcol = 'ycoords', areacol = 'areavar')
predict(slmobj)
#> Prediction Info:
#> Prediction SE 90% LB 90% UB
#> counts 813.2 24.64 772.6 853.7
#> Numb. Sites Sampled Total Numb. Sites Total Observed Average Density
#> counts 35 40 679 26.77